SpliceTools, a suite of downstream RNA splicing analysis tools to investigate mechanisms and impact of alternative splicing. Available through web interface at splicetools.org and by download at https://github.com/flemingtonlab/SpliceTools.
SpliceTools resource files:
- rMATS differential splicing files
- hg38 transcript annotation BED file
EBV genome annotation files for Next Generation Sequence Analysis.
Inverted Akata GTF file for quantitation.
Inverted Akata BED file with additional features such as origins of replication, repeats, microRNAs, etc., for visualization in IGV.