RESOURCES

 

Software

SpliceV for visualizing coverage of and publication quality printing of linear and backsplice junctions.  The software is available for download at https://github.com/flemingtonlab/SpliceV.

TRIMD for transcriptome resolution through integration of Iso-Seq, RNA-Seq, and deepCAGE data.  TRIMD scripts can be found at https://github.com/flemingtonlab/TRIMD.

 

Genome Annotations

EBV genome annotation files for Next Generation Sequence Analysis.

Inverted Akata fasta and fasta index files for building reference genomes. 

Inverted Akata GTF file for quantitation.

Inverted Akata BED file with additional features such as origins of replication, repeats, microRNAs, etc., for visualization in IGV.